BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006C06SP1|AL425501
(577 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 814 0.0
>3x_Contig1789
Length = 30977
Score = 814 bits (400), Expect = 0.0
Identities = 515/559 (92%), Gaps = 7/559 (1%)
Strand = Plus / Plus
Query: 18 cgatttctgccacgattattcgtgttaacgnctgcgtctagttctgcyaatgcgaaawat 77
||||||||||||||| || ||||| |||| |||||||||||||||| ||||||||| ||
Sbjct: 7018 cgatttctgccacgac-atccgtgtcaacggctgcgtctagttctgccaatgcgaaaaat 7076
Query: 78 cgtatgaratcgttgcccttgatcaatgaattcgaatycatyttacctmcgggaggttyt 137
||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
Sbjct: 7077 cgtatgaaatcgttgcccttgatcaatgaattcgaatccatcttacctccgggaggttct 7136
Query: 138 gcagytgmtgatttaacgtcattktcttcaactgcttcttcamcaaatgtgttcctacta 197
|||| || ||||||||||||||| ||||||||||||||||| |||||| ||||| ||||
Sbjct: 7137 gcagctgctgatttaacgtcattgacttcaactgcttcttcaccaaatg-gttcc-acta 7194
Query: 198 gtacatctcgtgggactggcgcacgcgggaatacagtgtcgttaagtggtggtwatamtg 257
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct: 7195 gtacatctcgtgggactggcgcacgcgggaatacagtgtcgtcaagtggtggtaatactg 7254
Query: 258 gatcgaacgcatcatcagmatcgtcttmataagcgtaataawaaaatgcgaaaacttytg 317
|||||||||||||||||| |||||||| || ||||| || | | ||||| ||||| ||
Sbjct: 7255 gatcgaacgcatcatcagcatcgtcttcatcagcgtcatcatctactgcgacaacttctg 7314
Query: 318 cagtgacttcaatgaaagatttgcatatatatcmgattgtaaggacttggattacgtgta 377
|||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||||| |
Sbjct: 7315 cagtgacttccatgaacgatttgcata-atatccgattg-aaggacttggattacgtg-a 7371
Query: 378 aattgtctacagaccaatacggttgtagattcttgcaacgaaagttggaaactcctcaag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7372 aattgtctacagaccaatacggttgtagattcttgcaacgaaagttggaaactcctcaag 7431
Query: 438 aatcggatcaagtgagagatttaatcttcgagaatgtcawcwatttcttcttggatctaa 497
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 7432 aatcggatcaagtgagagatttaatcttcgagaatgtcaacaatttcttcttggatctaa 7491
Query: 498 ttttgtgatcmattmggtaactatttgattcaaaagctatgtgattatttgacaactgat 557
||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7492 ttttg-gatccattcggtaactatttgattcaaaagctatgtgattatttgacaactgat 7550
Query: 558 cagaaaaccgcaatgatta 576
|||||||||||||||||||
Sbjct: 7551 cagaaaaccgcaatgatta 7569
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2692
Number of Sequences: 1807
Number of extensions: 2692
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 577
length of database: 10,358,551
effective HSP length: 16
effective length of query: 561
effective length of database: 10,329,639
effective search space: 5794927479
effective search space used: 5794927479
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.3 bits)